PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_759_iso_1
Common Namebpf-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 265aa    MW: 29280 Da    PI: 7.1193
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_759_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.7e-07161210147
                                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
                     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                                         r +++  E e lv+av+ lG+g+W+ +  +      +Rt  ++k++w ++
  cra_locus_759_iso_1_len_1372_ver_3 161 RRPFSVAEVEALVEAVEILGTGRWRDVKMRAFdnaDHRTYVDLKDKWKTL 210
                                         678999********************9766668**9***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-10153212IPR009057Homeodomain-like
PROSITE profilePS5129416.432156215IPR017930Myb domain
SMARTSM007171.9E-7160213IPR001005SANT/Myb domain
SuperFamilySSF466893.74E-16162243IPR009057Homeodomain-like
CDDcd116602.92E-18162212No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000781Cellular Componentchromosome, telomeric region
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
METVTAILGG GLRVGVVLQG KKVRDDNRTL QQAGILQSGN LDNLGFMLEP TLTQVPESPK  60
DSPHKLHCET DQNLCRSPAS PVLGSGLSND AFDSPSKMEQ LHESNHVAIH SPRTNTDTVT  120
DGEVPDSRAL VTLPAVSAEA LAMVPVNQKP KRCESSQRRT RRPFSVAEVE ALVEAVEILG  180
TGRWRDVKMR AFDNADHRTY VDLKDKWKTL VHTASISPQQ RRGEPVPQEL LDRVLSAHAY  240
WSQHQSKQTG KHHVEPLKIM DAQAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A3e-701452641116Telomere binding protein TBP1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009615640.11e-120PREDICTED: telomere repeat-binding protein 4-like
SwissprotQ9FFY97e-92TRP4_ARATH; Telomere repeat-binding protein 4
TrEMBLQ9FNS10.0Q9FNS1_CATRO; MYB-like DNA-binding protein
STRINGPGSC0003DMT4000602341e-119(Solanum tuberosum)
Publications ? help Back to Top
  1. van der Fits L,Zhang H,Menke FL,Deneka M,Memelink J
    A Catharanthus roseus BPF-1 homologue interacts with an elicitor-responsive region of the secondary metabolite biosynthetic gene Str and is induced by elicitor via a JA-independent signal transduction pathway.
    Plant Mol. Biol., 2000. 44(5): p. 675-85
    [PMID:11198427]